File Description to generate CpG.txt from map.csv indicating CpG ID, chromosome, position to generate binary pedigree data from 1KG-imputed data to set up FUSION.covar
simple.R to set up FUSION.pheno also generates the following files,

  • CpG.snps.txt - CpG - SNP correspondence
  • CpG.snps.dta - Stata version
  • CpG.list - CpG which contains SNPs

The following files were useful during development.

  • - to generate binary pedigree data from Axiom chip
  • ~~pheno.R~~ - to generate FUSION.pheno
  • - to generate FUSION.pheno
  • - to produce SNP list per CpG

The major consideration not to use them is the computing resources they need.