VEP run statistics
| VEP version (API) | 98 (98) |
| Annotation sources | Cache: /home/jhz22/.vep/homo_sapiens/98_GRCh37; Custom: clinvar_GRCh37.vcf.gz (exact) |
| Species | homo_sapiens |
| Command line options |
--assembly GRCh37 --cache --custom clinvar_GRCh37.vcf.gz,ClinVar,vcf,exact,0,CLNSIG,CLNREVSTAT,CLNDN --force_overwrite --input_data 1 154426970 154426970 A/C 1 --offline --output_file rs2228145.txt --species homo_sapiens |
| Start time | 2020-01-16 10:40:13 |
| End time | 2020-01-16 10:40:14 |
| Run time | 1 seconds |
| Input file | *Bio::EnsEMBL::VEP::Runner::IN |
| Output file | rs2228145.txt |
General statistics
| Lines of input read | 1 |
| Variants processed | 1 |
| Variants filtered out | 0 |
| Novel / existing variants | - |
| Overlapped genes | 1 |
| Overlapped transcripts | 6 |
| Overlapped regulatory features | - |