VEP run statistics

VEP version (API) 98 (98)
Annotation sources Cache: /home/jhz22/.vep/homo_sapiens/98_GRCh37; Custom: clinvar_GRCh37.vcf.gz (exact)
Species homo_sapiens
Command line options
--assembly GRCh37 --cache --custom clinvar_GRCh37.vcf.gz,ClinVar,vcf,exact,0,CLNSIG,CLNREVSTAT,CLNDN --force_overwrite --input_data 1 154426970 154426970 A/C 1 --offline --output_file rs2228145.txt --species homo_sapiens
Start time 2020-01-16 10:40:13
End time 2020-01-16 10:40:14
Run time 1 seconds
Input file *Bio::EnsEMBL::VEP::Runner::IN
Output file rs2228145.txt

General statistics

Lines of input read 1
Variants processed 1
Variants filtered out 0
Novel / existing variants -
Overlapped genes 1
Overlapped transcripts 6
Overlapped regulatory features -

Variant classes


Consequences (most severe)


Consequences (all)


Coding consequences


Variants by chromosome


Distribution of variants on chromosome 1


Position in protein