A gateway to reproducible research
Besides the references below, here is a diagram showing the process of tracking changes.
GitHub Copilot
Details are available to use on CSD3, https://cambridge-ceu.github.io/csd3/applications/copilot-cli.html.
How to contribute to cambridge-ceu
Assuming you have registered a GitHub account, simply contact owner of a repository to add yourself as a contributor. More generally, see https://jinghuazhao.github.io/physalia/.
Policies
This is in line with or somewhat mirrors University's policies for HPC.
References
Blischak JD, Davenport ER, Wilson G. A Quick Introduction to Version Control with Git and GitHub. PLoS Comput Biol 2016, https://doi.org/10.1371/journal.pcbi.1004668.
Chacon S, Straub B. Pro Git, 2e. Apress, 2014, https://link.springer.com/book/10.1007%2F978-1-4842-0076-6.
GitHub education and AWS Educate at the university https://help.uis.cam.ac.uk/resources/comms/archived-campaigns/github-aws, courses.
Technical guides and enhancements
- GitHub Guides including Hello world!, learning branching, git-scm documentation including Reference.
- Git(Kraken) tutorials.
- Enhanced GitHub, GitHub Dark Theme, Octotree, sourcegraph and Widescreen for GitHub for Google Chrome.
- GUI / IDE, HelloGitHub, awesome-GitHub, Run your blog on GitHub Pages with Python.
- git-extras.
- github-mermaid-extension
- git recall.
- GitHub token and Connection with ssh.
- Markdown Guide, Markdown reference by Typora (A hooking example for NodeInject).
- quarto Guide, https://quarto.org/docs/guide/
- Read the Docs Sphinx Theme and jekyll-rtd-theme (web)
CAUTION (legacy) -- there are issues under cardio on GitHub synchronisation so it is appropriate to use git pull but not git push which can replace files on the server with empty ones for no reasons. Sometimes it is necessary to disable the pop-up window as described in Notes.md.
Acknowledgment
Thanks to Amy Mason for links on learning brachnes and University training courses.