csd3

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The system
  • 1. System
  • 2. Policies
  • 3. Login
  • 4. Directories
  • 5. email
  • 6. Local web browsing
  • 7. Languages
  • 8. Software
  • 9. ceuadmin
  • 10. Parallel Computing
  • 11. QEMU
  • 12. SRCP
  • 13. Green Algorithms
  • 14. Training
  • 15. Contacts
  • 16. Acknowledgement
  • 17. A. Setup of modules
  • /systems/files/
    • precision-medicine-deepseek-r1.md
    • precision-medicine.md
    • why-the-sky-is-blue.md
Python packages
  • 1. gwas2vcf
  • 2. GWAS Catalog
  • 3. ldsc
  • 4. PhySO
  • 5. Scikit-LLM & OpenAI API
  • 6. snakemake
  • 7. Synapse
R packages
  • 1. brms
  • 2. conquer
  • 3. DescTools
  • 4. EasyQC
  • 5. geometries
  • 6. gifski
  • 7. git2r
  • 8. glmnet
  • 9. gnn
  • 10. gsl
  • 11. igraph
  • 12. jqr
  • 13. LDlinkR
  • 14. lpsymphony
  • 15. magick
  • 16. METRO
  • 17. nloptr
  • 18. PhenoScanner
  • 19. PKI
  • 20. plumber
  • 21. proj4
  • 22. protolite
  • 23. rawrr
  • 24. RcppTOML
  • 25. Rfast
  • 26. rgdal
  • 27. rgeos
  • 28. rgl
  • 29. Rhdf5lib
  • 30. rjags
  • 31. rJava
  • 32. RMariaDB
  • 33. rstan
  • 34. rtracklayer
  • 35. SAIGE
  • 36. sf
  • 37. snpnet
  • 38. sojo
  • 39. SPACox
  • 40. tenXplore
  • 41. xlsx
Applications
  • 1. ABCtoolbox
  • 2. AEGIS
  • 3. akt
  • 4. ANNOVAR
  • 5. AnythingLLM Desktop
  • 6. aria2
  • 7. bcftools
  • 8. bedops
  • 9. bgenix
  • 10. CaVEMaN
  • 11. CAVIAR/eCAVIAR
  • 12. circos
  • 13. citeproc
  • 14. CookHLA
  • 15. Cytoscape
  • 16. DNAnexus
  • 17. DosageConverter
  • 18. finemap
  • 19. firefox
  • 20. GATK
  • 21. GCTA
  • 22. geany
  • 23. Genotype-Harmonizer
  • 24. git
  • 25. gsutil
  • 26. hail
  • 27. HESS
  • 28. KentUtils
  • 29. lapack
  • 30. LEMMA
  • 31. LocusZoom
  • 32. METAL
  • 33. MetaXcan
  • 34. B. Notes on emsembl-vep
  • 35. ollama
  • 36. OpenMS
  • 37. pandoc
  • 38. PCA projection
  • 39. peer
  • 40. pgsc_calc
  • 41. PLINK
  • 42. polyphen-2
  • 43. poppler
  • 44. PRSice
  • 45. PRSoS
  • 46. pspp
  • 47. qpdf
  • 48. qtltools
  • 49. qt
  • 50. quarto
  • 51. regenie
  • 52. R
  • 53. RStudio
  • 54. Rust
  • 55. shapeit
  • 56. SMR
  • 57. snipar
  • 58. SNPTEST
  • 59. sra-tools
  • 60. SurvivalGWAS_SV
  • 61. tabix
  • 62. VEP
  • 63. Visual Studio code
  • /applications/files/
    • /applications/files/examples/
cardio
csd3
  • systems
  • README.md

The system

source: systems/README.md

  • System
  • Policies
  • Login
  • Directories
  • email
  • Local web browsing
  • Languages
  • Software
  • ceuadmin
  • Parallel Computing
  • QEMU
  • SRCP
  • Green Algorithms
  • Training
  • Contacts
  • Acknowledgement
  • A. Setup of modules
  • /systems/files/
    • precision-medicine-deepseek-r1.md
    • precision-medicine.md
    • why-the-sky-is-blue.md

:star: Introduction to Using the Shell in a HPC Context (GitHub)

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