source: applications/files/README.md
This directory contains various auxiliary files.
- Claude Code 终极使用指南（截至 2026 年 5 月 23 日）
- precision-medicine-deepseek-r1.md
- /applications/files/examples/
as seen from here.
- 1. System
- 2. Policies
- 3. Login
- 4. Directories
- 5. email
- 6. Web browsing
- 7. Languages
- 8. Software
- 9. ceuadmin
- 10. Parallel Computing
- 11. QEMU
- 12. SRCP
- 13. Green Algorithms
- 14. Training
- 15. Contacts
- 16. Acknowledgement
- 17. Setup of modules
- /systems/files/
- 1. BitNet
- 2. C2S-Scale
- 3. delphi (aka delphi-2M)
- 4. DrugAssist
- 5. gwas2vcf
- 6. GWAS Catalog
- 7. hail
- 8. hap.py
- 9. InstaNovo
- 10. ldsc
- 11. mity
- 12. PhySO
- 13. scGPT
- 14. Scikit-LLM & OpenAI API
- 15. snakemake
- 16. Sniffles
- 17. Synapse
- 1. brms
- 2. conquer
- 3. DescTools
- 4. EasyQC
- 5. geometries
- 6. gifski
- 7. git2r
- 8. glmnet
- 9. gnn
- 10. gsl
- 11. igraph
- 12. jqr
- 13. LDlinkR
- 14. lpsymphony
- 15. magick
- 16. METRO
- 17. nloptr
- 18. PhenoScanner
- 19. PKI
- 20. plumber
- 21. proj4
- 22. protolite
- 23. rawrr
- 24. RcppTOML
- 25. Rfast
- 26. rgdal
- 27. rgeos
- 28. rgl
- 29. Rhdf5lib
- 30. rjags
- 31. rJava
- 32. RMariaDB
- 33. rstan
- 34. rtracklayer
- 35. SAIGE
- 36. sf
- 37. snpnet
- 38. sojo
- 39. SPACox
- 40. tenXplore
- 41. xlsx
- 1. ABCtoolbox
- 2. AEGIS
- 3. akt
- 4. angsd
- 5. ANNOVAR
- 6. AnythingLLM Desktop
- 7. aria2
- 8. awscli
- 9. bcftools
- 10. bedops
- 11. bgenix
- 12. CaVEMaN
- 13. CAVIAR/eCAVIAR
- 14. circos
- 15. citeproc
- 16. claude-code
- 17. cli
- 18. CLUES2
- 19. codex-cli
- 20. CookHLA
- 21. copilot-cli
- 22. crux
- 23. Cytoscape
- 24. DNAnexus
- 25. docker
- 26. DosageConverter
- 27. finemap
- 28. Firefox
- 29. fresh
- 30. fsc2
- 31. GATK
- 32. gcloud
- 33. GCTA
- 34. geany
- 35. gemini-cli
- 36. Genotype-Harmonizer
- 37. git
- 38. gsutil
- 39. haplogrep
- 40. hapstat
- 41. hermes-agent
- 42. HESS
- 43. KentUtils
- 44. lapack
- 45. LEMMA
- 46. llama.cpp
- 47. LocusZoom
- 48. METAL
- 49. MetaXcan
- 50. miniforge3
- 51. MitoScape
- 52. MToolBox
- 53. node
- 54. ollama
- 55. OpenClaw
- 56. OpenMS
- 57. pandoc
- 58. PCA projection
- 59. peer
- 60. pgsc_calc
- 61. Pi
- 62. PLINK
- 63. podman
- 64. polyphen-2
- 65. poppler
- 66. postman
- 67. PRSice
- 68. PRSoS
- 69. pspp
- 70. qemu
- 71. qpdf
- 72. qtltools
- 73. qt
- 74. quarto
- 75. regenie
- 76. Relate
- 77. R
- 78. RStudio
- 79. Rust
- 80. selscan
- 81. SEQPower
- 82. shapeit
- 83. SMR
- 84. snipar
- 85. SNPTEST
- 86. sra-tools
- 87. SurvivalGWAS_SV
- 88. tabix
- 89. tesseract
- 90. VEP
- 91. Visual Studio code
- 92. Notes on emsembl-vep
- /applications/files/