LDlinkR
Issue install.packages("LDlinkR") from R but requires registration at https://ldlink.nci.nih.gov/?tab=apiaccess.
- 1. System
- 2. Login
- 3. Directories
- 4. Policies
- 5. email
- 6. Languages
- 7. Software
- 8. Parallel Computing
- 8. ceuadmin
- 10. Green Algorithms
- 11. Training
- 12. Contacts
- 13. Acknowledgement
- 13. Appendix A. Setup of modules
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/systems/files/
- 1. brms
- 2. conquer
- 3. DescTools
- 4. EasyQC
- 5. geometries
- 6. glmnet
- 7. gnn
- 8. gsl
- 9. igraph
- 10. jqr
- 11. LDlinkR
- 12. magick
- 13. METRO
- 14. nloptr
- 15. PhenoScanner
- 16. PKI
- 17. plumber
- 18. protolite
- 19. RcppTOML
- 20. Rfast
- 21. rgdal
- 22. rgeos
- 23. rgl
- 24. Rhdf5lib
- 25. rjags
- 26. rJava
- 27. RMariaDB
- 28. rstan
- 29. SAIGE
- 30. sf
- 31. snpnet
- 32. sojo
- 33. SPACox
- 34. tenXplore
- 35. xlsx
- 1. ABCtoolbox
- 2. AEGIS
- 3. akt
- 4. ANNOVAR
- 5. aria2
- 6. bcftools
- 7. bedops
- 8. bgenix
- 9. CaVEMaN
- 10. CAVIAR/eCAVIAR
- 11. circos
- 12. citeproc
- 13. CookHLA
- 14. Cytoscape
- 15. DNAnexus
- 16. DosageConverter
- 17. finemap
- 18. GATK
- 19. GCTA
- 20. geany
- 21. Genotype-Harmonizer
- 22. gsutil
- 23. hail
- 24. HESS
- 25. KentUtils
- 26. lapack
- 27. LEMMA
- 28. LocusZoom
- 29. METAL
- 30. MetaXcan
- 31. pandoc
- 32. PCA projection
- 33. pgsc_calc
- 34. PLINK
- 35. polyphen-2
- 36. poppler
- 37. PRSice
- 38. PRSoS
- 39. pspp
- 40. AlphaPept and PyOpenMS
- 41. qpdf
- 42. qtltools
- 43. quarto
- 44. regenie
- 45. R
- 46. RStudio
- 47. Rust
- 48. shapeit
- 49. SMR
- 50. snipar
- 51. SNPTEST
- 52. sra-tools
- 53. SurvivalGWAS_SV
- 54. tabix
- 55. VEP
- 56. Visual Studio code
- 57. Appendix B. Notes on emsembl-vep
- /applications/files/