csd3
The system
1. System
2. Policies
3. Login
4. Directories
5. email
6. Local web browsing
7. Languages
8. Software
9. ceuadmin
10. Parallel Computing
11. QEMU
12. SRCP
13. Green Algorithms
14. A. Setup of modules
15. Training
16. Contacts
17. Acknowledgement
/systems/files/
Python packages
1. gwas2vcf
2. GWAS Catalog
3. ldsc
4. PhySO
5. Scikit-LLM & OpenAI API
6. snakemake
7. Synapse
R packages
1. brms
2. conquer
3. DescTools
4. EasyQC
5. geometries
6. gifski
7. git2r
8. glmnet
9. gnn
10. gsl
11. igraph
12. jqr
13. LDlinkR
14. lpsymphony
15. magick
16. METRO
17. nloptr
18. PhenoScanner
19. PKI
20. plumber
21. protolite
22. rawrr
23. RcppTOML
24. Rfast
25. rgdal
26. rgeos
27. rgl
28. Rhdf5lib
29. rjags
30. rJava
31. RMariaDB
32. rstan
33. rtracklayer
34. SAIGE
35. sf
36. snpnet
37. sojo
38. SPACox
39. tenXplore
40. xlsx
Applications
1. ABCtoolbox
2. AEGIS
3. akt
4. ANNOVAR
5. aria2
6. bcftools
7. bedops
8. bgenix
9. CaVEMaN
10. CAVIAR/eCAVIAR
11. circos
12. citeproc
13. CookHLA
14. Cytoscape
15. DNAnexus
16. DosageConverter
17. finemap
18. GATK
19. GCTA
20. geany
21. Genotype-Harmonizer
22. git
23. gsutil
24. hail
25. HESS
26. KentUtils
27. lapack
28. LEMMA
29. LocusZoom
30. METAL
31. MetaXcan
32. B. Notes on emsembl-vep
33. pandoc
34. PCA projection
35. peer
36. pgsc_calc
37. PLINK
38. polyphen-2
39. poppler
40. PRSice
41. PRSoS
42. pspp
43. AlphaPept and PyOpenMS
44. qpdf
45. qtltools
46. quarto
47. regenie
48. R
49. RStudio
50. Rust
51. shapeit
52. SMR
53. snipar
54. SNPTEST
55. sra-tools
56. SurvivalGWAS_SV
57. tabix
58. VEP
59. Visual Studio code
/applications/files/
/applications/files/examples/
cardio
csd3
systems
policies.md
Policies
See
https://docs.hpc.cam.ac.uk/hpc/user-guide/policies.html#acknowledging-csd3
.
Previous
Next
2019-2025,
cambridge-ceu
Revision
ab0790e
Built with
GitHub Pages
using a
theme
provided by
RunDocs
.
csd3
master
GitHub
Homepage
Issues
Download
This
Software
is under the terms of
MIT License
.