Policies
See https://docs.hpc.cam.ac.uk/hpc/user-guide/policies.html#acknowledging-csd3.
- 1. System
- 2. Policies
- 3. Login
- 4. Directories
- 5. email
- 6. Web browsing
- 7. Languages
- 8. Software
- 9. ceuadmin
- 10. Parallel Computing
- 11. QEMU
- 12. SRCP
- 13. Green Algorithms
- 14. Training
- 15. Contacts
- 16. Acknowledgement
- 17. Setup of modules
- /systems/files/
- 1. BitNet
- 2. C2S-Scale
- 3. DrugAssist
- 4. gwas2vcf
- 5. GWAS Catalog
- 6. hail
- 7. hap.py
- 8. InstaNovo
- 9. ldsc
- 10. PhySO
- 11. scGPT
- 12. Scikit-LLM & OpenAI API
- 13. snakemake
- 14. Sniffles
- 15. Synapse
- 1. brms
- 2. conquer
- 3. DescTools
- 4. EasyQC
- 5. geometries
- 6. gifski
- 7. git2r
- 8. glmnet
- 9. gnn
- 10. gsl
- 11. igraph
- 12. jqr
- 13. LDlinkR
- 14. lpsymphony
- 15. magick
- 16. METRO
- 17. nloptr
- 18. PhenoScanner
- 19. PKI
- 20. plumber
- 21. proj4
- 22. protolite
- 23. rawrr
- 24. RcppTOML
- 25. Rfast
- 26. rgdal
- 27. rgeos
- 28. rgl
- 29. Rhdf5lib
- 30. rjags
- 31. rJava
- 32. RMariaDB
- 33. rstan
- 34. rtracklayer
- 35. SAIGE
- 36. sf
- 37. snpnet
- 38. sojo
- 39. SPACox
- 40. tenXplore
- 41. xlsx
- 1. ABCtoolbox
- 2. AEGIS
- 3. akt
- 4. ANNOVAR
- 5. AnythingLLM Desktop
- 6. aria2
- 7. awscli
- 8. bcftools
- 9. bedops
- 10. bgenix
- 11. CaVEMaN
- 12. CAVIAR/eCAVIAR
- 13. circos
- 14. citeproc
- 15. cli
- 16. CookHLA
- 17. crux
- 18. Cytoscape
- 19. DNAnexus
- 20. docker
- 21. DosageConverter
- 22. finemap
- 23. firefox
- 24. GATK
- 25. GCTA
- 26. geany
- 27. Genotype-Harmonizer
- 28. git
- 29. gsutil
- 30. haplogrep
- 31. HESS
- 32. KentUtils
- 33. lapack
- 34. LEMMA
- 35. llama.cpp
- 36. LocusZoom
- 37. METAL
- 38. MetaXcan
- 39. miniforge3
- 40. MToolBox
- 41. node
- 42. ollama
- 43. OpenMS
- 44. pandoc
- 45. PCA projection
- 46. peer
- 47. pgsc_calc
- 48. PLINK
- 49. podman
- 50. polyphen-2
- 51. poppler
- 52. PRSice
- 53. PRSoS
- 54. pspp
- 55. qemu
- 56. qpdf
- 57. qtltools
- 58. qt
- 59. quarto
- 60. regenie
- 61. R
- 62. RStudio
- 63. Rust
- 64. SEQPower
- 65. shapeit
- 66. SMR
- 67. snipar
- 68. SNPTEST
- 69. sra-tools
- 70. SurvivalGWAS_SV
- 71. tabix
- 72. tesseract
- 73. VEP
- 74. Visual Studio code
- 75. Notes on emsembl-vep
- /applications/files/