csd3
The system
1. Acknowledgement
2. ceuadmin
3. Contacts
4. Directories
5. email
6. Green Algorithms
7. Login
8. Policies
9. Software
10. System
11. Training
cardio
Applications
1. ABCtoolbox
2. AEGIS
3. akt
4. ANNOVAR
5. aria2
6. bcftools
7. bedops
8. bgenix
9. CaVEMaN
10. CAVIAR/eCAVIAR
11. circos
12. citeproc
13. CookHLA
14. Cytoscape
15. DNAnexus
16. DosageConverter
17. finemap
18. GCTA
19. Genotype-Harmonizer
20. gsutil
21. hail
22. HESS
23. KentUtils
24. lapack
25. ldsc
26. LEMMA
27. METAL
28. MetaXcan
29. pandoc
30. PCA projection
31. PLINK
32. polyphen-2
33. poppler
34. PRSice
35. PRSoS
36. pspp
37. AlphaPept and PyOpenMS
38. qpdf
39. qtltools
40. regenie
41. R
42. RStudio
43. shapeit
44. SMR
45. snipar
46. SNPTEST
47. SurvivalGWAS_SV
48. tabix
49. VEP
50. Visual Studio code
/applications/files/
/applications/files/examples/
Python packages
1. gwas2vcf
2. PhySO
3. snakemake
4. Synapse
R packages
1. R/brms
2. R/conquer
3. R/EasyQC
4. R/geometries
5. R/glmnet
6. R/gnn
7. R/gsl
8. R/jqr
9. R/LDlinkR
10. R/magick
11. R/METRO
12. R/nloptr
13. R/PhenoScanner
14. R/PKI
15. R/plumber
16. R/protolite
17. R/RcppTOML
18. R/Rfast
19. R/rgdal
20. R/rgeos
21. R/rgl
22. R/Rhdf5lib
23. R/rjags
24. R/rJava
25. R/rstan
26. R/SAIGE
27. R/sf
28. R/snpnet
29. R/sojo
30. R/SPACox
31. R/tenXplore
32. R/xlsx
csd3
systems
policies.md
Policies
See
https://docs.hpc.cam.ac.uk/hpc/user-guide/policies.html#acknowledging-csd3
.
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2019-2023,
cambridge-ceu
Revision
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