Policies
See https://docs.hpc.cam.ac.uk/hpc/user-guide/policies.html#acknowledging-csd3.
- 1. System
- 2. Policies
- 3. Login
- 4. Directories
- 5. email
- 6. Web browsing
- 7. Languages
- 8. Software
- 9. ceuadmin
- 10. Parallel Computing
- 11. QEMU
- 12. SRCP
- 13. Green Algorithms
- 14. Training
- 15. Contacts
- 16. Acknowledgement
- 17. Setup of modules
- /systems/files/
- 1. BitNet
- 2. C2S-Scale
- 3. delphi (aka delphi-2M)
- 4. DrugAssist
- 5. gwas2vcf
- 6. GWAS Catalog
- 7. hail
- 8. hap.py
- 9. InstaNovo
- 10. ldsc
- 11. mity
- 12. PhySO
- 13. scGPT
- 14. Scikit-LLM, Ollama & OpenAI API
- 15. snakemake
- 16. Sniffles
- 17. Synapse
- 1. brms
- 2. conquer
- 3. DescTools
- 4. EasyQC
- 5. geometries
- 6. gifski
- 7. git2r
- 8. glmnet
- 9. gnn
- 10. gsl
- 11. igraph
- 12. jqr
- 13. LDlinkR
- 14. lpsymphony
- 15. magick
- 16. METRO
- 17. nloptr
- 18. PhenoScanner
- 19. PKI
- 20. plumber
- 21. proj4
- 22. protolite
- 23. rawrr
- 24. RcppTOML
- 25. Rfast
- 26. rgdal
- 27. rgeos
- 28. rgl
- 29. Rhdf5lib
- 30. rjags
- 31. rJava
- 32. RMariaDB
- 33. rstan
- 34. rtracklayer
- 35. SAIGE
- 36. sf
- 37. snpnet
- 38. sojo
- 39. SPACox
- 40. tenXplore
- 41. xlsx
- 1. ABCtoolbox
- 2. AEGIS
- 3. akt
- 4. angsd
- 5. ANNOVAR
- 6. AnythingLLM Desktop
- 7. aria2
- 8. awscli
- 9. bcftools
- 10. bedops
- 11. bgenix
- 12. CaVEMaN
- 13. CAVIAR/eCAVIAR
- 14. circos
- 15. citeproc
- 16. claude-code
- 17. cli
- 18. CLUES2
- 19. codex-cli
- 20. CookHLA
- 21. copilot-cli
- 22. crux
- 23. Cytoscape
- 24. DNAnexus
- 25. docker
- 26. DosageConverter
- 27. fastqc
- 28. finemap
- 29. Firefox
- 30. fresh
- 31. fsc2
- 32. GATK
- 33. gcloud
- 34. GCTA
- 35. gdal
- 36. geany
- 37. gemini-cli
- 38. Genotype-Harmonizer
- 39. git
- 40. gsutil
- 41. haplogrep
- 42. hapstat
- 43. hermes-agent
- 44. HESS
- 45. KentUtils
- 46. lapack
- 47. LEMMA
- 48. llama.cpp
- 49. LocusZoom
- 50. METAL
- 51. MetaXcan
- 52. miniforge3
- 53. MitoScape
- 54. MToolBox
- 55. node
- 56. ollama
- 57. OpenClaw
- 58. OpenMS
- 59. pandoc
- 60. PCA projection
- 61. peer
- 62. pgsc_calc
- 63. Pi
- 64. PLINK
- 65. podman
- 66. polyphen-2
- 67. poppler
- 68. postman
- 69. PRSice
- 70. PRSoS
- 71. pspp
- 72. qemu
- 73. qpdf
- 74. qtltools
- 75. qt
- 76. quarto
- 77. regenie
- 78. Relate
- 79. R
- 80. RStudio
- 81. Rust
- 82. selscan
- 83. SEQPower
- 84. shapeit
- 85. SMR
- 86. snipar
- 87. SNPTEST
- 88. sra-tools
- 89. SurvivalGWAS_SV
- 90. tabix
- 91. tesseract
- 92. VEP
- 93. Visual Studio code
- 94. Notes on emsembl-vep
- /applications/files/