Software
ceuadmin
See https://cambridge-ceu.github.io/csd3/systems/ceuadmin.html for additional information.
git
The popular git can be loaded,
git --help
git add --help
libraOffice
Official website: https://www.libreoffice.org/
The executables (oocalc
, ooffice
, ooimpress
, oomath
, ooviewdoc
, oowriter
) are in the /usr/bin
directory and can be conveniently called from the console, e.g.,
oowriter README.docx
to load the Word document.
MATLAB
Official website: https://www.mathworks.com/products/matlab.html.
module avail matlab
module load matlab/r2019b
followed by matlab
.
MySQL
One could access databases elsewhere, e.g., at UCSC – see examples on VEP.
There isn't any MySQL cluster running as a general service on CSD3. Do you believe your group has something running on a VM hosted on our network possibly? If you need a database for your work, running it in your own department and then allowing access to it from CSD3. Databases are not suitable candidates to run on a HPC cluster, the resource requirements are different and by definition they need to be running continuously whilst access is required, so wouldn't be run via SLURM for example.
R
See languages section, https://cambridge-ceu.github.io/csd3/systems/languages.html.
pspp
Official website: https://www.gnu.org/software/pspp/
module load ceuadmin/pspp
with command-line tool pspp
and a GUI counterpart psppire
.
SLURM
Due to increase of size, the entry is moved here, https://cambridge-ceu.github.io/csd3/systems/ParallelComputing.html.
Stata
Official website: https://www.stata.com/.
We issue module avail ceuadmin/stata
to give,
----------------------------------------------------------------- /usr/local/Cluster-Config/modulefiles -----------------------------------------------------------------
ceuadmin/stata/14 ceuadmin/stata/15 ceuadmin/stata/16
e.g., as a CEU member the following is possible,
module load ceuadmin/stata/14
The meta-analysis (metan) and Mendelian Randomisation (mrrobust) packages can be installed as follows,
ssc install metan
net install mrrobust, from("https://raw.github.com/remlapmot/mrrobust/master/") replace
It is now also possible systemwide, with module avail stata
giving
-------------------------------------------------- /usr/local/Cluster-Config/modulefiles --------------------------------------------------
stata/14 stata/17 stata/18
so as to use module load stata; stata