csd3
The system
1. System
2. Policies
3. Login
4. Directories
5. email
6. Web browsing
7. Languages
8. Software
9. ceuadmin
10. Parallel Computing
11. QEMU
12. SRCP
13. Green Algorithms
14. Training
15. Contacts
16. Acknowledgement
17. Setup of modules
/systems/files/
precision-medicine-deepseek-r1.md
precision-medicine.md
Rust/nightly
why-the-sky-is-blue.md
Python packages
1. gwas2vcf
2. GWAS Catalog
3. hail
4. ldsc
5. PhySO
6. Scikit-LLM & OpenAI API
7. snakemake
8. Synapse
R packages
1. brms
2. conquer
3. DescTools
4. EasyQC
5. geometries
6. gifski
7. git2r
8. glmnet
9. gnn
10. gsl
11. igraph
12. jqr
13. LDlinkR
14. lpsymphony
15. magick
16. METRO
17. nloptr
18. PhenoScanner
19. PKI
20. plumber
21. proj4
22. protolite
23. rawrr
24. RcppTOML
25. Rfast
26. rgdal
27. rgeos
28. rgl
29. Rhdf5lib
30. rjags
31. rJava
32. RMariaDB
33. rstan
34. rtracklayer
35. SAIGE
36. sf
37. snpnet
38. sojo
39. SPACox
40. tenXplore
41. xlsx
Applications
1. ABCtoolbox
2. AEGIS
3. akt
4. ANNOVAR
5. AnythingLLM Desktop
6. aria2
7. bcftools
8. bedops
9. bgenix
10. CaVEMaN
11. CAVIAR/eCAVIAR
12. circos
13. citeproc
14. CookHLA
15. Cytoscape
16. DNAnexus
17. DosageConverter
18. finemap
19. firefox
20. GATK
21. GCTA
22. geany
23. Genotype-Harmonizer
24. git
25. gsutil
26. HESS
27. KentUtils
28. lapack
29. LEMMA
30. LocusZoom
31. METAL
32. MetaXcan
33. ollama
34. OpenMS
35. pandoc
36. PCA projection
37. peer
38. pgsc_calc
39. PLINK
40. polyphen-2
41. poppler
42. PRSice
43. PRSoS
44. pspp
45. qpdf
46. qtltools
47. qt
48. quarto
49. regenie
50. R
51. RStudio
52. Rust
53. shapeit
54. SMR
55. snipar
56. SNPTEST
57. sra-tools
58. SurvivalGWAS_SV
59. tabix
60. VEP
61. Visual Studio code
62. Notes on emsembl-vep
/applications/files/
/applications/files/examples/
cardio
csd3
R
gifski.md
gifski
1.12.0-2
This requires
ceuadmin/rust/1.74.1
.
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2019-2025,
cambridge-ceu
Revision
764117e
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