csd3
The system
1. System
2. Policies
3. Login
4. Directories
5. email
6. Local web browsing
7. Languages
8. Software
9. ceuadmin
10. Parallel Computing
11. QEMU
12. SRCP
13. Green Algorithms
14. Training
15. Contacts
16. Acknowledgement
17. A. Setup of modules
/systems/files/
precision-medicine-deepseek-r1.md
precision-medicine.md
why-the-sky-is-blue.md
Python packages
1. gwas2vcf
2. GWAS Catalog
3. ldsc
4. PhySO
5. Scikit-LLM & OpenAI API
6. snakemake
7. Synapse
R packages
1. brms
2. conquer
3. DescTools
4. EasyQC
5. geometries
6. gifski
7. git2r
8. glmnet
9. gnn
10. gsl
11. igraph
12. jqr
13. LDlinkR
14. lpsymphony
15. magick
16. METRO
17. nloptr
18. PhenoScanner
19. PKI
20. plumber
21. proj4
22. protolite
23. rawrr
24. RcppTOML
25. Rfast
26. rgdal
27. rgeos
28. rgl
29. Rhdf5lib
30. rjags
31. rJava
32. RMariaDB
33. rstan
34. rtracklayer
35. SAIGE
36. sf
37. snpnet
38. sojo
39. SPACox
40. tenXplore
41. xlsx
Applications
1. ABCtoolbox
2. AEGIS
3. akt
4. ANNOVAR
5. AnythingLLM Desktop
6. aria2
7. bcftools
8. bedops
9. bgenix
10. CaVEMaN
11. CAVIAR/eCAVIAR
12. circos
13. citeproc
14. CookHLA
15. Cytoscape
16. DNAnexus
17. DosageConverter
18. finemap
19. firefox
20. GATK
21. GCTA
22. geany
23. Genotype-Harmonizer
24. git
25. gsutil
26. hail
27. HESS
28. KentUtils
29. lapack
30. LEMMA
31. LocusZoom
32. METAL
33. MetaXcan
34. B. Notes on emsembl-vep
35. ollama
36. OpenMS
37. pandoc
38. PCA projection
39. peer
40. pgsc_calc
41. PLINK
42. polyphen-2
43. poppler
44. PRSice
45. PRSoS
46. pspp
47. qpdf
48. qtltools
49. qt
50. quarto
51. regenie
52. R
53. RStudio
54. Rust
55. shapeit
56. SMR
57. snipar
58. SNPTEST
59. sra-tools
60. SurvivalGWAS_SV
61. tabix
62. VEP
63. Visual Studio code
/applications/files/
/applications/files/examples/
cardio
csd3
R
gifski.md
gifski
1.12.0-2
This requires
ceuadmin/rust/1.74.1
.
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2019-2025,
cambridge-ceu
Revision
f3107d0
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