csd3
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14. Training
15. Contacts
16. Acknowledgement
17. Setup of modules
/systems/files/
Rust/nightly
Python packages
1. BitNet
2. C2S-Scale
3. delphi (aka delphi-2M)
4. DrugAssist
5. gwas2vcf
6. GWAS Catalog
7. hail
8. hap.py
9. InstaNovo
10. ldsc
11. mity
12. PhySO
13. scGPT
14. Scikit-LLM & OpenAI API
15. snakemake
16. Sniffles
17. Synapse
R packages
1. brms
2. conquer
3. DescTools
4. EasyQC
5. geometries
6. gifski
7. git2r
8. glmnet
9. gnn
10. gsl
11. igraph
12. jqr
13. LDlinkR
14. lpsymphony
15. magick
16. METRO
17. nloptr
18. PhenoScanner
19. PKI
20. plumber
21. proj4
22. protolite
23. rawrr
24. RcppTOML
25. Rfast
26. rgdal
27. rgeos
28. rgl
29. Rhdf5lib
30. rjags
31. rJava
32. RMariaDB
33. rstan
34. rtracklayer
35. SAIGE
36. sf
37. snpnet
38. sojo
39. SPACox
40. tenXplore
41. xlsx
Applications
1. ABCtoolbox
2. AEGIS
3. akt
4. angsd
5. ANNOVAR
6. AnythingLLM Desktop
7. aria2
8. awscli
9. bcftools
10. bedops
11. bgenix
12. CaVEMaN
13. CAVIAR/eCAVIAR
14. circos
15. citeproc
16. cli
17. CLUES2
18. CookHLA
19. crux
20. Cytoscape
21. DNAnexus
22. docker
23. DosageConverter
24. finemap
25. Firefox
26. fsc2
27. GATK
28. GCTA
29. geany
30. Genotype-Harmonizer
31. git
32. gsutil
33. haplogrep
34. hapstat
35. HESS
36. KentUtils
37. lapack
38. LEMMA
39. llama.cpp
40. LocusZoom
41. METAL
42. MetaXcan
43. miniforge3
44. MitoScape
45. MToolBox
46. node
47. ollama
48. OpenMS
49. pandoc
50. PCA projection
51. peer
52. pgsc_calc
53. PLINK
54. podman
55. polyphen-2
56. poppler
57. postman
58. PRSice
59. PRSoS
60. pspp
61. qemu
62. qpdf
63. qtltools
64. qt
65. quarto
66. regenie
67. Relate
68. R
69. RStudio
70. Rust
71. selscan
72. SEQPower
73. shapeit
74. SMR
75. snipar
76. SNPTEST
77. sra-tools
78. SurvivalGWAS_SV
79. tabix
80. tesseract
81. VEP
82. Visual Studio code
83. Notes on emsembl-vep
/applications/files/
precision-medicine-deepseek-r1.md
/applications/files/examples/
cardio
csd3
R
gifski.md
gifski
1.12.0-2
This requires
ceuadmin/rust/1.74.1
.
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2019-2025,
cambridge-ceu
Revision
1f10959
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