csd3
The system
1. System
2. Policies
3. Login
4. Directories
5. email
6. Local web browsing
7. Languages
8. Software
9. ceuadmin
10. Parallel Computing
11. QEMU
12. SRCP
13. Green Algorithms
14. Training
15. Contacts
16. Acknowledgement
17. A. Setup of modules
/systems/files/
precision-medicine.md
why-the-sky-is-blue.md
Python packages
1. gwas2vcf
2. GWAS Catalog
3. ldsc
4. PhySO
5. Scikit-LLM & OpenAI API
6. snakemake
7. Synapse
R packages
1. brms
2. conquer
3. DescTools
4. EasyQC
5. geometries
6. gifski
7. git2r
8. glmnet
9. gnn
10. gsl
11. igraph
12. jqr
13. LDlinkR
14. lpsymphony
15. magick
16. METRO
17. nloptr
18. PhenoScanner
19. PKI
20. plumber
21. proj4
22. protolite
23. rawrr
24. RcppTOML
25. Rfast
26. rgdal
27. rgeos
28. rgl
29. Rhdf5lib
30. rjags
31. rJava
32. RMariaDB
33. rstan
34. rtracklayer
35. SAIGE
36. sf
37. snpnet
38. sojo
39. SPACox
40. tenXplore
41. xlsx
Applications
1. ABCtoolbox
2. AEGIS
3. akt
4. ANNOVAR
5. aria2
6. bcftools
7. bedops
8. bgenix
9. CaVEMaN
10. CAVIAR/eCAVIAR
11. circos
12. citeproc
13. CookHLA
14. Cytoscape
15. DNAnexus
16. DosageConverter
17. finemap
18. GATK
19. GCTA
20. geany
21. Genotype-Harmonizer
22. git
23. gsutil
24. hail
25. HESS
26. KentUtils
27. lapack
28. LEMMA
29. LocusZoom
30. METAL
31. MetaXcan
32. ollama
33. pandoc
34. PCA projection
35. peer
36. pgsc_calc
37. PLINK
38. polyphen-2
39. poppler
40. PRSice
41. PRSoS
42. pspp
43. OpenMS
44. qpdf
45. qtltools
46. qt
47. quarto
48. regenie
49. R
50. RStudio
51. Rust
52. shapeit
53. SMR
54. snipar
55. SNPTEST
56. sra-tools
57. SurvivalGWAS_SV
58. tabix
59. VEP
60. Visual Studio code
61. B. Notes on emsembl-vep
/applications/files/
/applications/files/examples/
cardio
csd3
R
gifski.md
gifski
1.12.0-2
This requires
ceuadmin/rust/1.74.1
.
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2019-2025,
cambridge-ceu
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