csd3
The system
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2. Policies
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4. Directories
5. email
6. Web browsing
7. Languages
8. Software
9. ceuadmin
10. Parallel Computing
11. QEMU
12. SRCP
13. Green Algorithms
14. Training
15. Contacts
16. Acknowledgement
17. Setup of modules
/systems/files/
Rust/nightly
Python packages
1. BitNet
2. C2S-Scale
3. DrugAssist
4. gwas2vcf
5. GWAS Catalog
6. hail
7. hap.py
8. InstaNovo
9. ldsc
10. PhySO
11. scGPT
12. Scikit-LLM & OpenAI API
13. snakemake
14. Sniffles
15. Synapse
R packages
1. brms
2. conquer
3. DescTools
4. EasyQC
5. geometries
6. gifski
7. git2r
8. glmnet
9. gnn
10. gsl
11. igraph
12. jqr
13. LDlinkR
14. lpsymphony
15. magick
16. METRO
17. nloptr
18. PhenoScanner
19. PKI
20. plumber
21. proj4
22. protolite
23. rawrr
24. RcppTOML
25. Rfast
26. rgdal
27. rgeos
28. rgl
29. Rhdf5lib
30. rjags
31. rJava
32. RMariaDB
33. rstan
34. rtracklayer
35. SAIGE
36. sf
37. snpnet
38. sojo
39. SPACox
40. tenXplore
41. xlsx
Applications
1. ABCtoolbox
2. AEGIS
3. akt
4. angsd
5. ANNOVAR
6. AnythingLLM Desktop
7. aria2
8. awscli
9. bcftools
10. bedops
11. bgenix
12. CaVEMaN
13. CAVIAR/eCAVIAR
14. circos
15. citeproc
16. cli
17. CookHLA
18. crux
19. Cytoscape
20. DNAnexus
21. docker
22. DosageConverter
23. finemap
24. firefox
25. GATK
26. GCTA
27. geany
28. Genotype-Harmonizer
29. git
30. gsutil
31. haplogrep
32. HESS
33. KentUtils
34. lapack
35. LEMMA
36. llama.cpp
37. LocusZoom
38. METAL
39. MetaXcan
40. miniforge3
41. MToolBox
42. node
43. ollama
44. OpenMS
45. pandoc
46. PCA projection
47. peer
48. pgsc_calc
49. PLINK
50. podman
51. polyphen-2
52. poppler
53. PRSice
54. PRSoS
55. pspp
56. qemu
57. qpdf
58. qtltools
59. qt
60. quarto
61. regenie
62. R
63. RStudio
64. Rust
65. selscan
66. SEQPower
67. shapeit
68. SMR
69. snipar
70. SNPTEST
71. sra-tools
72. SurvivalGWAS_SV
73. tabix
74. tesseract
75. VEP
76. Visual Studio code
77. Notes on emsembl-vep
/applications/files/
precision-medicine-deepseek-r1.md
/applications/files/examples/
cardio
csd3
R
gifski.md
gifski
1.12.0-2
This requires
ceuadmin/rust/1.74.1
.
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2019-2025,
cambridge-ceu
Revision
0f8ac9d
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