csd3
The system
1. System
2. Policies
3. Login
4. Directories
5. email
6. Languages
7. Software
8. ceuadmin
9. Parallel Computing
10. QEMU
11. SRCP
12. Green Algorithms
13. A. Setup of modules
14. Training
15. Contacts
16. Acknowledgement
/systems/files/
Python packages
1. gwas2vcf
2. GWAS Catalog
3. ldsc
4. PhySO
5. Scikit-LLM & OpenAI API
6. snakemake
7. Synapse
R packages
1. brms
2. conquer
3. DescTools
4. EasyQC
5. geometries
6. gifski
7. glmnet
8. gnn
9. gsl
10. igraph
11. jqr
12. LDlinkR
13. lpsymphony
14. magick
15. METRO
16. nloptr
17. PhenoScanner
18. PKI
19. plumber
20. protolite
21. rawrr
22. RcppTOML
23. Rfast
24. rgdal
25. rgeos
26. rgl
27. Rhdf5lib
28. rjags
29. rJava
30. RMariaDB
31. rstan
32. rtracklayer
33. SAIGE
34. sf
35. snpnet
36. sojo
37. SPACox
38. tenXplore
39. xlsx
Applications
1. ABCtoolbox
2. AEGIS
3. akt
4. ANNOVAR
5. aria2
6. bcftools
7. bedops
8. bgenix
9. CaVEMaN
10. CAVIAR/eCAVIAR
11. circos
12. citeproc
13. CookHLA
14. Cytoscape
15. DNAnexus
16. DosageConverter
17. finemap
18. GATK
19. GCTA
20. geany
21. Genotype-Harmonizer
22. gsutil
23. hail
24. HESS
25. KentUtils
26. lapack
27. LEMMA
28. LocusZoom
29. METAL
30. MetaXcan
31. pandoc
32. PCA projection
33. peer
34. pgsc_calc
35. PLINK
36. polyphen-2
37. poppler
38. PRSice
39. PRSoS
40. pspp
41. AlphaPept and PyOpenMS
42. qpdf
43. qtltools
44. quarto
45. regenie
46. R
47. RStudio
48. Rust
49. shapeit
50. SMR
51. snipar
52. SNPTEST
53. sra-tools
54. SurvivalGWAS_SV
55. tabix
56. VEP
57. Visual Studio code
58. B. Notes on emsembl-vep
/applications/files/
/applications/files/examples/
cardio
csd3
R
gifski.md
gifski
1.12.0-2
This requires
ceuadmin/rust/1.74.1
.
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2019-2024,
cambridge-ceu
Revision
9d5bd65
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