Directories

Users

This section gives a summary of the file system.

Go to CSD3 portal: https://selfservice.uis.cam.ac.uk/account/ and accept the terms and conditions. An rds/ directory should then be created with symbolic links as follows,

hpc-work -> /rds/user/$USER/hpc-work/
genetics_resources -> /rds/project/jmmh2/rds-jmmh2-genetics_resources/
legacy_projects -> /rds/project/jmmh2/rds-jmmh2-legacy_projects/
pre_qc_data -> /rds/project/jmmh2/rds-jmmh2-pre_qc_data/
projects -> /rds/project/jmmh2/rds-jmmh2-projects/
public_databases -> /rds/project/jmmh2/rds-jmmh2-public_databases/
results -> /rds/project/jmmh2/rds-jmmh2-results

Short shorter (without rds-jmmh2- prefix) names as on Cardio can be created equivalently with

if [ ! -d /home/$USER/rds ]; then mkdir /home/$USER/rds; fi
ln -sf /rds/user/$USER/hpc-work /home/$USER/rds/hpc-work
export rt=/rds/project/jmmh2
for d in $(ls $rt | xargs -l basename | sed 's/rds-jmmh2-//g'); do ln -sf $rt/rds-jmmh2-$d /home/$USER/rds/$d; done

Note to list the directories you need postfix them with ‘/'.

Data managers

Self-service storage, https://selfservice.uis.cam.ac.uk/storage/project/303/.

In the case of Hospital Episode Statistics (HES) data, add users from https://selfservice.uis.cam.ac.uk/storage/project/306/.

See also

SRCP

Web: https://docs.hpc.cam.ac.uk/srcp/

Information

Application

Access