This section gives a summary of the file system.
Go to CSD3 portal: https://selfservice.uis.cam.ac.uk/account/ and accept the terms and conditions. An
rds/ directory should then be created with symbolic links as follows,
hpc-work -> /rds/user/$USER/hpc-work/ genetics_resources -> /rds/project/jmmh2/rds-jmmh2-genetics_resources/ legacy_projects -> /rds/project/jmmh2/rds-jmmh2-legacy_projects/ pre_qc_data -> /rds/project/jmmh2/rds-jmmh2-pre_qc_data/ projects -> /rds/project/jmmh2/rds-jmmh2-projects/ public_databases -> /rds/project/jmmh2/rds-jmmh2-public_databases/ results -> /rds/project/jmmh2/rds-jmmh2-results
Short shorter (without rds-jmmh2- prefix) names as on Cardio can be created equivalently with
if [ ! -d /home/$USER/rds ]; then mkdir /home/$USER/rds; fi ln -sf /rds/user/$USER/hpc-work /home/$USER/rds/hpc-work export rt=/rds/project/jmmh2 for d in $(ls $rt | xargs -l basename | sed 's/rds-jmmh2-//g'); do ln -sf $rt/rds-jmmh2-$d /home/$USER/rds/$d; done
Note to list the directories you need postfix them with ‘/'.
Self-service storage, https://selfservice.uis.cam.ac.uk/storage/project/303/.
In the case of Hospital Episode Statistics (HES) data, add users from https://selfservice.uis.cam.ac.uk/storage/project/306/.
- CEU, "W:\Administration\CSD3 Data Users\CSD3Datamanagement_only"
- SOPs, SOPs
- Guide to CSD3 data management.docx
- Guide to CSD3.docx
- audit, Access Audits\Programmes\CSD3 audit usergroup mappings\audit.R"
- SOPs, SOPs
- External links
See "W:\Administration\CSD3 Data Users\Information for Users".
See "V:\Operations\GENERAL_CEU\CSD3\monitoring CSD3 usage".
- Acceptable Use and Information Security Policies, https://docs.hpc.cam.ac.uk/srcp/isms-docs/index.html
- Ouick start guide to configure your device for first login, https://docs.hpc.cam.ac.uk/srcp/2fa/get-token.html
- User Onboarding (SRCP Request User Access), https://docs.hpc.cam.ac.uk/srcp/user-onboarding/index.html
- sftp, sftp [crsid]@data-vhpc.srcp.hpc.cam.ac.uk
- vHPC, https://vhpc.srcp.hpc.cam.ac.uk (Raven login followed by OTP/2FA)