csd3
The system
  • 1. System
  • 2. Login
  • 3. Policies
  • 4. Directories
  • 5. email
  • 6. Software
  • 7. ceuadmin
  • 8. Training
  • 9. Contacts
  • 10. Green Algorithms
  • 11. Acknowledgement
cardio
Applications
  • 1. ABCtoolbox
  • 2. AEGIS
  • 3. akt
  • 4. ANNOVAR
  • 5. aria2
  • 6. bcftools
  • 7. bedops
  • 8. bgenix
  • 9. CaVEMaN
  • 10. CAVIAR/eCAVIAR
  • 11. circos
  • 12. citeproc
  • 13. CookHLA
  • 14. Cytoscape
  • 15. DNAnexus
  • 16. DosageConverter
  • 17. finemap
  • 18. GCTA
  • 19. Genotype-Harmonizer
  • 20. gsutil
  • 21. gwas2vcf
  • 22. hail
  • 23. HESS
  • 24. KentUtils
  • 25. lapack
  • 26. ldsc
  • 27. LEMMA
  • 28. METAL
  • 29. MetaXcan
  • 30. pandoc
  • 31. PCA projection
  • 32. PLINK
  • 33. polyphen-2
  • 34. poppler
  • 35. PRSice
  • 36. PRSoS
  • 37. pspp
  • 38. AlphaPept and PyOpenMS
  • 39. qpdf
  • 40. qtltools
  • 41. regenie
  • 42. R
  • 43. RStudio
  • 44. shapeit
  • 45. SMR
  • 46. snakemake
  • 47. snipar
  • 48. SNPTEST
  • 49. SurvivalGWAS_SV
  • 50. tabix
  • 51. VEP
  • 52. Visual Studio code
  • /applications/files/
    • /applications/files/examples/
R packages
  • 1. R/brms
  • 2. R/EasyQC
  • 3. R/glmnet
  • 4. R/gnn
  • 5. R/gsl
  • 6. R/LDlinkR
  • 7. R/magick
  • 8. R/METRO
  • 9. R/nloptr
  • 10. R/PhenoScanner
  • 11. R/PKI
  • 12. R/plumber
  • 13. R/protolite
  • 14. R/Rfast
  • 15. R/rgdal
  • 16. R/rgeos
  • 17. R/Rhdf5lib
  • 18. R/rjags
  • 19. R/rJava
  • 20. R/rstan
  • 21. R/SAIGE
  • 22. R/sf
  • 23. R/snpnet
  • 24. R/sojo
  • 25. R/SPACox
  • 26. R/tenXplore
  • 27. R/xlsx
csd3
  • applications
  • README.md

Applications

source: applications/README.md

Whenever appropriate, it is assumed that the destination of software installation is ${HPC_WORK}, e.g., via export HPC_WORK=/rds/user/$USER/hpc-work in .bashrc.

  • ABCtoolbox
  • AEGIS
  • akt
  • ANNOVAR
  • aria2
  • bcftools
  • bedops
  • bgenix
  • CaVEMaN
  • CAVIAR/eCAVIAR
  • circos
  • citeproc
  • CookHLA
  • Cytoscape
  • DNAnexus
  • DosageConverter
  • finemap
  • GCTA
  • Genotype-Harmonizer
  • gsutil
  • gwas2vcf
  • hail
  • HESS
  • KentUtils
  • lapack
  • ldsc
  • LEMMA
  • METAL
  • MetaXcan
  • pandoc
  • PCA projection
  • PLINK
  • polyphen-2
  • poppler
  • PRSice
  • PRSoS
  • pspp
  • AlphaPept and PyOpenMS
  • qpdf
  • qtltools
  • regenie
  • R
  • RStudio
  • shapeit
  • SMR
  • snakemake
  • snipar
  • SNPTEST
  • SurvivalGWAS_SV
  • tabix
  • VEP
  • Visual Studio code
  • /applications/files/
    • /applications/files/examples/
Next

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This Software is under the terms of MIT License.