Applications
source: applications/README.md
Whenever appropriate, it is assumed that the destination of software installation is ${HPC_WORK}, e.g.,
via export HPC_WORK=/rds/user/$USER/hpc-work in .bashrc.
- ABCtoolbox
- AEGIS
- akt
- ANNOVAR
- aria2
- bcftools
- bedops
- bgenix
- CaVEMaN
- CAVIAR/eCAVIAR
- circos
- citeproc
- CookHLA
- Cytoscape
- DNAnexus
- DosageConverter
- finemap
- GCTA
- Genotype-Harmonizer
- gsutil
- gwas2vcf
- hail
- HESS
- KentUtils
- lapack
- ldsc
- LEMMA
- METAL
- MetaXcan
- pandoc
- PCA projection
- PLINK
- polyphen-2
- poppler
- PRSice
- PRSoS
- pspp
- AlphaPept and PyOpenMS
- qpdf
- qtltools
- regenie
- R
- RStudio
- shapeit
- SMR
- snakemake
- snipar
- SNPTEST
- SurvivalGWAS_SV
- tabix
- VEP
- Visual Studio code
- /applications/files/