Acknowledgement
The repository was created as a result of the cambridge-ceu organisation; information regarding system login, Jupyter, polyphen, Stata and VEP received inputs from HPC supporint team.
- 1. System
- 2. Policies
- 3. Login
- 4. Directories
- 5. email
- 6. Local web browsing
- 7. Languages
- 8. Software
- 9. ceuadmin
- 10. Parallel Computing
- 11. QEMU
- 12. SRCP
- 13. Green Algorithms
- 14. A. Setup of modules
- 15. Training
- 16. Contacts
- 17. Acknowledgement
-
/systems/files/
- 1. brms
- 2. conquer
- 3. DescTools
- 4. EasyQC
- 5. geometries
- 6. gifski
- 7. git2r
- 8. glmnet
- 9. gnn
- 10. gsl
- 11. igraph
- 12. jqr
- 13. LDlinkR
- 14. lpsymphony
- 15. magick
- 16. METRO
- 17. nloptr
- 18. PhenoScanner
- 19. PKI
- 20. plumber
- 21. protolite
- 22. rawrr
- 23. RcppTOML
- 24. Rfast
- 25. rgdal
- 26. rgeos
- 27. rgl
- 28. Rhdf5lib
- 29. rjags
- 30. rJava
- 31. RMariaDB
- 32. rstan
- 33. rtracklayer
- 34. SAIGE
- 35. sf
- 36. snpnet
- 37. sojo
- 38. SPACox
- 39. tenXplore
- 40. xlsx
- 1. ABCtoolbox
- 2. AEGIS
- 3. akt
- 4. ANNOVAR
- 5. aria2
- 6. bcftools
- 7. bedops
- 8. bgenix
- 9. CaVEMaN
- 10. CAVIAR/eCAVIAR
- 11. circos
- 12. citeproc
- 13. CookHLA
- 14. Cytoscape
- 15. DNAnexus
- 16. DosageConverter
- 17. finemap
- 18. GATK
- 19. GCTA
- 20. geany
- 21. Genotype-Harmonizer
- 22. gsutil
- 23. hail
- 24. HESS
- 25. KentUtils
- 26. lapack
- 27. LEMMA
- 28. LocusZoom
- 29. METAL
- 30. MetaXcan
- 31. pandoc
- 32. PCA projection
- 33. peer
- 34. pgsc_calc
- 35. PLINK
- 36. polyphen-2
- 37. poppler
- 38. PRSice
- 39. PRSoS
- 40. pspp
- 41. AlphaPept and PyOpenMS
- 42. qpdf
- 43. qtltools
- 44. quarto
- 45. regenie
- 46. R
- 47. RStudio
- 48. Rust
- 49. shapeit
- 50. SMR
- 51. snipar
- 52. SNPTEST
- 53. sra-tools
- 54. SurvivalGWAS_SV
- 55. tabix
- 56. VEP
- 57. Visual Studio code
- 58. B. Notes on emsembl-vep
- /applications/files/