circos
Web: http://circos.ca (Google group)
Installation
wget -qO- http://www.circos.ca/distribution/circos-current.tgz | \
tar xvfz -
cd circos-0.69-9
bin/circos --modules
wget -qO- http://circos.ca/distribution/circos-tutorials-current.tgz | \
tar xvfz -
wget -qO- http://www.circos.ca/distribution/circos-tools-current.tgz | \
tar xvfz -
The following required Perl modules can be installed
Config::General (v2.50 or later)
Font::TTF
GD
List::MoreUtils
Math::Bezier
Math::Round
Math::VecStat
Params::Validate
Readonly
Regexp::Common
Set::IntSpan (v1.16 or later)
Text::Format
For instance, the Perl module DBI can be furnished with
sudo perl -MCPAN -e shell
install DBI
The CircosAPI module requires namespace::autoclean, Moose, JSON::PP and String::Util.
Examples
We can enter the example/ directory to run its script (run), which contains the following lines.
#!/bin/bash
echo "Creating image circos.png and writing report to run.out."
echo "Example takes ~45-60 seconds to generate."
../bin/circos -conf etc/circos.conf -debug_group summary,timer > run.out
where run.out holds the log.