SNPTEST

Web: https://www.well.ox.ac.uk/~gav/snptest/

cd ${HPC_WORK}
wget -qO- http://www.well.ox.ac.uk/~gav/resources/snptest_v2.5.6_CentOS_Linux7.8-x86_64_dynamic.tgz | \
tar xvfz -
ln -sf ${HPC_WORK}/snptest_v2.5.6_CentOS_Linux7.8.2003-x86_64_dynamic/snptest_v2.5.6 ${HPC_WORK}/bin/snptest_v2.5.6
(
  echo module load gcc/5
  echo "snptest_v2.5.6 $@"
) > ${HPC_WORK}/bin/snptest
 

Note that we have wrap up snptest_v2.5.6 inside snptest since it requires gcc/5 or above to function properly.

csd3

master