git
Web: https://git-scm.com/downloads/linux.
9/2/2025 UpdateModule ceuadmin/git/2.48.1 is now available, which takes advantage of the modernised approach via meson and avoid memory leaks.
Installation
wget -qO- https://www.kernel.org/pub/software/scm/git/git-2.48.1.tar.gz | \
tar xfz -
cd git-2.48.1
module load ceuadmin/libgcrypt ceuadmin/docbook2X
source ~/COVID-19/py37/bin/activate
make prefix=$CEUADMIN/git/2.48.1 install install-doc install-html
The Python call sets default to meson but the ./configure --prefix=. routine should also work after the make statement above.
Additional work is needed when adding install-info in the make statement above in relation to ceuadmin/docbook2X.
A list of packages from the Python virtual enivonment, including meson above, is obtained with module load ceuadmin/gsutil/4.51;pip list.
Package Version
----------------------------- ----------
aiohttp 3.7.4
aiohttp-session 2.7.0
alabaster 0.7.12
algorithms 0.1.4
appdirs 1.4.4
argcomplete 1.11.1
asgiref 3.3.1
astor 0.8.1
async-timeout 3.0.1
asyncinit 0.2.4
attrs 19.3.0
autograd 1.6.2
autograd-gamma 0.5.0
Babel 2.9.0
backcall 0.1.0
beautifulsoup4 4.9.3
bed-reader 0.2.24
bgen-reader 4.0.7
bleach 3.1.5
bokeh 1.4.0
boto 2.49.0
boto3 1.17.102
botocore 1.20.102
bs4 0.0.1
cached-property 1.5.2
cachetools 4.1.0
cbgen 1.0.1
certifi 2020.4.5.1
cffi 1.14.6
cget 0.2.0
chardet 3.0.4
chembl-webresource-client 0.10.2
click 8.1.7
click-man 0.4.1
cloudpickle 1.6.0
commonmark 0.9.1
crcmod 1.7
cryptography 36.0.2
cycler 0.10.0
Cython 0.29.18
dask 2021.7.0
datacache 1.1.5
debugpy 1.7.0
decorator 4.4.2
defusedxml 0.6.0
Deprecated 1.2.12
dill 0.3.4
Django 3.1.5
docutils 0.16
dxpy 0.325.1
easydict 1.9
EditorConfig 0.12.3
entrypoints 0.3
et-xmlfile 1.1.0
fasteners 0.15
formulaic 0.6.6
fsspec 0.9.0
future 0.18.2
gcloud 0.18.3
gcs-oauth2-boto-plugin 2.5
gcsfs 0.8.0
ghp-import 2.1.0
gitdb 4.0.9
GitPython 3.1.24
gnomad 0.3.0
google-api-core 1.30.0
google-apitools 0.5.31
google-auth 1.32.0
google-auth-oauthlib 0.4.1
google-cloud-core 1.7.1
google-cloud-storage 1.25.0
google-reauth 0.1.0
google-resumable-media 0.5.1
googleapis-common-protos 1.53.0
graphlib-backport 1.0.3
gsutil 4.51
gtfparse 1.2.1
h5py 3.6.0
hail 0.2.70
hdbscan 0.8.26
httplib2 0.18.1
humanize 1.0.0
hurry.filesize 0.9
idna 2.8
imageio 2.31.2
imagesize 1.2.0
img2pdf 0.4.1
importlib-metadata 6.7.0
iniconfig 1.1.1
interface-meta 1.3.0
ipykernel 6.16.2
ipython 7.34.0
ipython-genutils 0.2.0
ipywidgets 7.5.1
itk 5.3.0
itk-core 5.3.0
itk-filtering 5.3.0
itk-io 5.3.0
itk-numerics 5.3.0
itk-registration 5.3.0
itk-segmentation 5.3.0
janus 0.6.1
jedi 0.17.0
Jinja2 3.1.2
jmespath 0.10.0
joblib 0.15.1
jsbeautifier 1.14.0
jsonschema 3.2.0
jupyter 1.0.0
jupyter-client 7.4.9
jupyter-console 6.6.3
jupyter-core 4.12.0
kiwisolver 1.3.1
lifelines 0.27.8
livereload 2.6.3
llvmlite 0.38.1
locket 0.2.1
lunr 0.5.8
lxml 4.6.3
Markdown 3.4.4
MarkupSafe 2.1.3
matplotlib 3.4.2
matplotlib-inline 0.1.6
memoized-property 1.0.3
mergedeep 1.3.4
mermaid 0.3.2
meson 0.63.3
mistune 0.8.4
mkdocs 1.5.3
mkdocs-material 7.1.8
mkdocs-material-extensions 1.0.1
mkdocs-mermaid2-plugin 0.5.1
mkdocs-section-index 0.3.2
mock 2.0.0
monotonic 1.5
more-itertools 8.14.0
mpmath 1.3.0
multidict 4.7.6
nbconvert 5.6.1
nbformat 5.0.6
nbsphinx 0.9.3
nest-asyncio 1.5.8
networkx 2.5
ninja 1.10.0
nltk 3.5
notebook 6.0.3
nptyping 2.5.0
numba 0.55.0
numpy 1.21.5
oauth2client 4.1.3
oauthlib 3.1.0
openpyxl 3.1.2
packaging 21.3
pandas 1.1.4
pandas-plink 2.2.9
pandoc 2.3
pandocfilters 1.4.2
parsimonious 0.8.1
parso 0.7.0
partd 1.2.0
pathspec 0.11.2
patsy 0.5.2
pbr 5.4.5
persepolis 3.2.0
pexpect 4.8.0
pickleshare 0.7.5
pikepdf 2.16.1
Pillow 9.5.0
pip 20.3.3
platformdirs 4.0.0
pluggy 0.13.1
plumbum 1.8.2
ply 3.11
pooch 1.5.1
progressbar2 4.2.0
progressbar33 2.4
prometheus-client 0.7.1
prompt-toolkit 3.0.41
protobuf 3.17.3
psutil 5.9.1
ptyprocess 0.6.0
py 1.10.0
py4j 0.10.9
pyarrow 4.0.1
pyasn1 0.4.8
pyasn1-modules 0.2.8
pycairo 1.20.0
pycparser 2.20
pyensembl 1.9.1
Pygments 2.6.1
PyGObject 3.38.0
PyJWT 1.7.1
pyliftover 0.4
pymdown-extensions 8.2
pynrrd 1.0.0
pyOpenSSL 19.1.0
pypandoc 1.12
pyparsing 2.4.7
pyrsistent 0.16.0
pysnptools 0.5.3
pyspark 3.1.2
pytest 6.2.4
pytest-runner 6.0.0
python-dateutil 2.8.2
python-json-logger 0.1.11
python-utils 3.5.2
pytz 2020.1
pyu2f 0.1.4
PyWavelets 1.3.0
PyYAML 5.3.1
pyyaml-env-tag 0.1
pyzmq 25.1.1
qtconsole 5.4.4
QtPy 2.4.1
recommonmark 0.7.1
regex 2021.3.17
requests 2.25.1
requests-cache 0.5.2
requests-oauthlib 1.3.0
retry-decorator 1.1.1
rpy2 3.4.5
rsa 4.0
ruamel.yaml 0.16.12
ruamel.yaml.clib 0.2.2
s3transfer 0.4.2
scikit-image 0.19.3
scikit-learn 1.0.2
scipy 1.7.1
seaborn 0.12.1
Send2Trash 1.5.0
serializable 0.2.1
setuptools 51.1.2
simplejson 3.17.2
six 1.14.0
slackclient 2.5.0
smmap 5.0.0
snipar 0.0.12
snowballstemmer 2.1.0
SocksiPy-branch 1.1
soupsieve 2.1
Sphinx 3.4.3
sphinx-gallery 0.3.1
sphinxcontrib-applehelp 1.0.2
sphinxcontrib-devhelp 1.0.2
sphinxcontrib-htmlhelp 1.0.3
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.3
sphinxcontrib-serializinghtml 1.1.4
sqlparse 0.4.1
statsmodels 0.13.2
svgutils 0.3.4
sympy 1.10.1
tabulate 0.8.3
tensorqtl 1.0.6
termcolor 2.3.0
terminado 0.8.3
testpath 0.4.4
texttable 1.6.4
threadpoolctl 2.0.0
tifffile 2021.11.2
tinytimer 0.0.0
toml 0.10.2
toolz 0.11.1
torch 1.9.0
tornado 6.2
tqdm 4.64.1
traitlets 5.9.0
typechecks 0.1.0
typing-extensions 4.7.1
tzlocal 2.1
ujson 4.0.2
urllib3 1.26.6
vext 0.7.4
vext.gi 0.7.4
watchdog 3.0.0
wcwidth 0.1.9
webencodings 0.5.1
websocket-client 0.54.0
wheel 0.36.2
widgetsnbextension 3.5.1
wrapt 1.12.1
xarray 0.18.2
yarl 1.4.2
zipp 3.1.0
zstandard 0.15.2