source: systems/files/README.md
This directory contains various auxiliary files as seen from here.
- 1. System
- 2. Login
- 3. Directories
- 4. Policies
- 5. email
- 6. Languages
- 7. Software
- 8. Parallel Computing
- 8. ceuadmin
- 10. Green Algorithms
- 11. Training
- 12. Contacts
- 13. Acknowledgement
- 13. Appendix A. Setup of modules
-
/systems/files/
- 1. brms
- 2. conquer
- 3. DescTools
- 4. EasyQC
- 5. geometries
- 6. glmnet
- 7. gnn
- 8. gsl
- 9. igraph
- 10. jqr
- 11. LDlinkR
- 12. magick
- 13. METRO
- 14. nloptr
- 15. PhenoScanner
- 16. PKI
- 17. plumber
- 18. protolite
- 19. RcppTOML
- 20. Rfast
- 21. rgdal
- 22. rgeos
- 23. rgl
- 24. Rhdf5lib
- 25. rjags
- 26. rJava
- 27. RMariaDB
- 28. rstan
- 29. SAIGE
- 30. sf
- 31. snpnet
- 32. sojo
- 33. SPACox
- 34. tenXplore
- 35. xlsx
- 1. ABCtoolbox
- 2. AEGIS
- 3. akt
- 4. ANNOVAR
- 5. aria2
- 6. bcftools
- 7. bedops
- 8. bgenix
- 9. CaVEMaN
- 10. CAVIAR/eCAVIAR
- 11. circos
- 12. citeproc
- 13. CookHLA
- 14. Cytoscape
- 15. DNAnexus
- 16. DosageConverter
- 17. finemap
- 18. GATK
- 19. GCTA
- 20. geany
- 21. Genotype-Harmonizer
- 22. gsutil
- 23. hail
- 24. HESS
- 25. KentUtils
- 26. lapack
- 27. LEMMA
- 28. LocusZoom
- 29. METAL
- 30. MetaXcan
- 31. pandoc
- 32. PCA projection
- 33. peer
- 34. pgsc_calc
- 35. PLINK
- 36. polyphen-2
- 37. poppler
- 38. PRSice
- 39. PRSoS
- 40. pspp
- 41. AlphaPept and PyOpenMS
- 42. qpdf
- 43. qtltools
- 44. quarto
- 45. regenie
- 46. R
- 47. RStudio
- 48. Rust
- 49. shapeit
- 50. SMR
- 51. snipar
- 52. SNPTEST
- 53. sra-tools
- 54. SurvivalGWAS_SV
- 55. tabix
- 56. VEP
- 57. Visual Studio code
- 58. Appendix B. Notes on emsembl-vep
- /applications/files/