csd3

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The system
  • 1. System
  • 2. Policies
  • 3. Login
  • 4. Directories
  • 5. email
  • 6. Web browsing
  • 7. Languages
  • 8. Software
  • 9. ceuadmin
  • 10. Parallel Computing
  • 11. QEMU
  • 12. SRCP
  • 13. Green Algorithms
  • 14. Training
  • 15. Contacts
  • 16. Acknowledgement
  • 17. Setup of modules
  • /systems/files/
    • Rust/nightly
Python packages
  • 1. BitNet
  • 2. C2S-Scale
  • 3. DrugAssist
  • 4. gwas2vcf
  • 5. GWAS Catalog
  • 6. hail
  • 7. hap.py
  • 8. InstaNovo
  • 9. ldsc
  • 10. PhySO
  • 11. scGPT
  • 12. Scikit-LLM & OpenAI API
  • 13. snakemake
  • 14. Sniffles
  • 15. Synapse
R packages
  • 1. brms
  • 2. conquer
  • 3. DescTools
  • 4. EasyQC
  • 5. geometries
  • 6. gifski
  • 7. git2r
  • 8. glmnet
  • 9. gnn
  • 10. gsl
  • 11. igraph
  • 12. jqr
  • 13. LDlinkR
  • 14. lpsymphony
  • 15. magick
  • 16. METRO
  • 17. nloptr
  • 18. PhenoScanner
  • 19. PKI
  • 20. plumber
  • 21. proj4
  • 22. protolite
  • 23. rawrr
  • 24. RcppTOML
  • 25. Rfast
  • 26. rgdal
  • 27. rgeos
  • 28. rgl
  • 29. Rhdf5lib
  • 30. rjags
  • 31. rJava
  • 32. RMariaDB
  • 33. rstan
  • 34. rtracklayer
  • 35. SAIGE
  • 36. sf
  • 37. snpnet
  • 38. sojo
  • 39. SPACox
  • 40. tenXplore
  • 41. xlsx
Applications
  • 1. ABCtoolbox
  • 2. AEGIS
  • 3. akt
  • 4. ANNOVAR
  • 5. AnythingLLM Desktop
  • 6. aria2
  • 7. awscli
  • 8. bcftools
  • 9. bedops
  • 10. bgenix
  • 11. CaVEMaN
  • 12. CAVIAR/eCAVIAR
  • 13. circos
  • 14. citeproc
  • 15. cli
  • 16. CookHLA
  • 17. crux
  • 18. Cytoscape
  • 19. DNAnexus
  • 20. docker
  • 21. DosageConverter
  • 22. finemap
  • 23. firefox
  • 24. GATK
  • 25. GCTA
  • 26. geany
  • 27. Genotype-Harmonizer
  • 28. git
  • 29. gsutil
  • 30. haplogrep
  • 31. HESS
  • 32. KentUtils
  • 33. lapack
  • 34. LEMMA
  • 35. llama.cpp
  • 36. LocusZoom
  • 37. METAL
  • 38. MetaXcan
  • 39. MToolBox
  • 40. node
  • 41. ollama
  • 42. OpenMS
  • 43. pandoc
  • 44. PCA projection
  • 45. peer
  • 46. pgsc_calc
  • 47. PLINK
  • 48. podman
  • 49. polyphen-2
  • 50. poppler
  • 51. PRSice
  • 52. PRSoS
  • 53. pspp
  • 54. qemu
  • 55. qpdf
  • 56. qtltools
  • 57. qt
  • 58. quarto
  • 59. regenie
  • 60. R
  • 61. RStudio
  • 62. Rust
  • 63. SEQPower
  • 64. shapeit
  • 65. SMR
  • 66. snipar
  • 67. SNPTEST
  • 68. sra-tools
  • 69. SurvivalGWAS_SV
  • 70. tabix
  • 71. tesseract
  • 72. VEP
  • 73. Visual Studio code
  • 74. Notes on emsembl-vep
  • /applications/files/
    • precision-medicine-deepseek-r1.md
    • /applications/files/examples/
cardio
csd3
  • systems
  • README.md

The system

source: systems/README.md

  • System
  • Policies
  • Login
  • Directories
  • email
  • Web browsing
  • Languages
  • Software
  • ceuadmin
  • Parallel Computing
  • QEMU
  • SRCP
  • Green Algorithms
  • Training
  • Contacts
  • Acknowledgement
  • Setup of modules
  • /systems/files/
    • Rust/nightly

:star: Introduction to Using the Shell in a HPC Context (GitHub)

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2019-2025, cambridge-ceu Revision 67fd371
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This Software is under the terms of MIT License.